PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G007000.3
Common NameB456_001G007000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 279aa    MW: 30342.9 Da    PI: 8.5826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G007000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000331361741255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.001G007000.3 136 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 174
                         6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-10134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-6134178No hitNo description
Gene3DG3DSA:4.10.280.102.1E-7138180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MIIITKRGGL VGEEQATALQ HQASTGNNNI MKQENYVYGH ANEDYHHHHH HHYQGSKATT  60
NWSMATASSS PKSCVTTSFN NNMLDFSSNI KVDTATRQHP PLMDPSPECN SSTASGGALK  120
KTRVQPSATQ STFKVRKEKL GDRITALHQL VSPFGKTDTA SVLLEAIGYI RFLQSQIEAL  180
SLPYLGSDGS SGNMRQQQQS VQGERNCIFP EDPGQLLNEK CMKKRKGGPA DLQDSNEEPK  240
KNLKSRGLCL VPISCTLQVG SDNGADYWAP PSLGGGFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9644091e-129JX964409.1 Gossypium hirsutum clone NBRI_TRANS-678 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468959.10.0PREDICTED: transcription factor bHLH68-like isoform X1
SwissprotQ8S3D19e-81BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2PT330.0A0A0D2PT33_G
STRINGVIT_11s0016g03560.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-82bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]